MST

The Microbial Source Tracking (MST) module employs machine-learning classification for precise tracking of ARG pollution from various sources. It utilizes ARG abundance profiles to determine the origins of detected ARGs in environmental samples.

Input

MST Input You can get the example from Galaxy -> MST -> version 1.2 (link)

Output

example log

proportions: the mean proportions over all Gibbs draws for each sample

proportions_sd: standard deviation of the mean proportions for each sample

svg: pinechart

Example output

Known Issues

For Apple m1 series users, please install arm version of Rscript with libraries reshape2 RColorBrewer ggplot2 scales gridExtra and add the path to the ARGs Desktop, otherwise the speed would be quite slow.
The version of Rscript should be less than 4.